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ChatSpatial
MCP server for spatial transcriptomics analysis with 60+ integrated methods covering cell annotation, deconvolution, spatial statistics, and visualization.
biology-medicine-and-bioinformatics
Installation
npx -y ChatSpatialConfiguration
{
"mcpServers": {
"ChatSpatial": {
"command": "npx",
"args": ["-y", "ChatSpatial"]
}
}
}How to use
- Run the installation command above (if needed)
- Open your Claude Code settings file (~/.claude/settings.json)
- Add the configuration to the mcpServers section
- Restart Claude Code to apply changes