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ChatSpatial

MCP server for spatial transcriptomics analysis with 60+ integrated methods covering cell annotation, deconvolution, spatial statistics, and visualization.

biology-medicine-and-bioinformatics

Installation

npx -y ChatSpatial

Configuration

{
  "mcpServers": {
    "ChatSpatial": {
      "command": "npx",
      "args": ["-y", "ChatSpatial"]
    }
  }
}

How to use

  1. Run the installation command above (if needed)
  2. Open your Claude Code settings file (~/.claude/settings.json)
  3. Add the configuration to the mcpServers section
  4. Restart Claude Code to apply changes
View source on GitHub